MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
NCBI Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 5,034
rRNA: 13
tRNA: 87
tmRNA: 1
Total number of protein coding genes annotated/found:
4,833
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range
Gene Product Name
SEQF5015|JADGKR010000001.1
MBF0739282.1
Genome Viewer
NA
AA
200/66
309474-309673
DUF4754 family protein
SEQF5015|JADGKR010000001.1
MBF0739281.1
Genome Viewer
NA
AA
288/96
309175-309462
hypothetical protein
SEQF5015|JADGKR010000001.1
MBF0739280.1
Genome Viewer
NA
AA
342/114
308823-309164
DUF4761 family protein
SEQF5015|JADGKR010000001.1
MBF0739279.1
Genome Viewer
NA
AA
207/69
308364-308570
hypothetical protein
SEQF5015|JADGKR010000001.1
MBF0739278.1
Genome Viewer
NA
AA
288/96
308070-308357
hypothetical protein
SEQF5015|JADGKR010000001.1
MBF0739277.1
Genome Viewer
NA
AA
321/107
307956-307636
helix-turn-helix transcriptional regulator
SEQF5015|JADGKR010000001.1
MBF0739276.1
Genome Viewer
NA
AA
1005/335
307539-306535
tyrosine-type recombinase/integrase
SEQF5015|JADGKR010000001.1
MBF0739275.1
Genome Viewer
NA
AA
1158/386
306376-305219
4-phosphoerythronate dehydrogenase PdxB
SEQF5015|JADGKR010000001.1
MBF0739274.1
Genome Viewer
NA
AA
1014/338
305153-304140
aspartate-semialdehyde dehydrogenase
SEQF5015|JADGKR010000001.1
MBF0739273.1
Genome Viewer
NA
AA
813/271
304140-303328
tRNA pseudouridine(38-40) synthase TruA
SEQF5015|JADGKR010000001.1
MBF0739272.1
Genome Viewer
NA
AA
660/220
303245-302586
DedA family protein
SEQF5015|JADGKR010000001.1
MBF0739271.1
Genome Viewer
NA
AA
915/305
302430-301516
acetyl-CoA carboxylase%2C carboxyltransferase subunit beta
SEQF5015|JADGKR010000001.1
MBF0739270.1
Genome Viewer
NA
AA
1269/423
301446-300178
bifunctional tetrahydrofolate synthase/dihydrofolate synthase
SEQF5015|JADGKR010000001.1
MBF0739269.1
Genome Viewer
NA
AA
663/221
300188-299526
cell division protein DedD
SEQF5015|JADGKR010000001.1
MBF0739268.1
Genome Viewer
NA
AA
489/163
299267-298779
colicin V production protein
SEQF5015|JADGKR010000001.1
MBF0739267.1
Genome Viewer
NA
AA
1518/506
298742-297225
amidophosphoribosyltransferase
SEQF5015|JADGKR010000001.1
MBF0739266.1
Genome Viewer
NA
AA
570/190
297130-296561
flavin prenyltransferase UbiX
SEQF5015|JADGKR010000001.1
MBF0739265.1
Genome Viewer
NA
AA
783/261
296295-295513
lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT
SEQF5015|JADGKR010000001.1
MBF0739264.1
Genome Viewer
NA
AA
783/261
295292-294510
histidine ABC transporter substrate-binding protein HisJ
SEQF5015|JADGKR010000001.1
MBF0739263.1
Genome Viewer
NA
AA
687/229
294420-293734
histidine ABC transporter permease HisQ
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI,UID,Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by
